BIOINFORMATICS (DRY) LABORATORY

Department of Statistics, University of Rajshahi, Rajshahi-6205
Publications
List of publications in 2022
  1. Alam MS, Sultana A, Reza MS, Amanullah M, Kabir SR, Mollah MNH (2022) Integrated bioinformatics and statistical approaches to explore molecular biomarkers for breast cancer diagnosis, prognosis and therapies. PLoS ONE 17(5): e0268967. https://doi.org/10.1371/journal.pone.0268967
  2. Mosharaf MP, Reza MS, Gov E, Mahumud RA, Mollah MNH. Disclosing Potential Key Genes, Therapeutic Targets and Agents for Non-Small Cell Lung Cancer: Evidence from Integrative Bioinformatics Analysis. Vaccines. 2022; 10(5):771. https://doi.org/10.3390/vaccines10050771
  3. Alam MS, Rahaman MM, Sultana A, Wang G, Mollah MNH. Statistics and network-based approaches to identify molecular mechanisms that drive the progression of breast cancer. Comput Biol Med. 2022; 145:105508. https://doi.org/10.1016/j.compbiomed.2022.105508 PMID: 35447458.
  4. Ahmed FF, Reza MS, Sarker MS, Islam MS, Mosharaf MP, Hasan S, et al. (2022) Identification of host transcriptome-guided repurposable drugs for SARS-CoV-1 infections and their validation with SARS-CoV-2 infections by using the integrated bioinformatics approaches. PLoS ONE 17(4): e0266124. https://doi.org/10.1371/journal.pone.0266124
  5. Reza, M.S.; Harun-Or-Roshid, M.; Islam, M.A.; Hossen, M.A.; Hossain, M.T.; Feng, S.; Xi, W.; Mollah, M.N.H.; Wei, Y. Bioinformatics Screening of Potential Biomarkers from mRNA Expression Profiles to Discover Drug Targets and Agents for Cervical Cancer. Int. J. Mol. Sci. 2022, 23, 3968.https://doi.org/10.3390/ijms23073968
  6. Mosharaf, M.P., Reza, M.S., Kibria, M.K. et al. Computational identification of host genomic biomarkers highlighting their functions, pathways and regulators that influence SARS-CoV-2 infections and drug repurposing. Sci Rep 12, 4279 (2022). https://doi.org/10.1038/s41598-022-08073-8
  7. Tasmia, S.A., Kibria, M.K., Tuly, K.F. et al. Prediction of serine phosphorylation sites mapping on Schizosaccharomyces Pombe by fusing three encoding schemes with the random forest classifier. Sci Rep 12, 2632 (2022). https://doi.org/10.1038/s41598-022-06529-5
List of publications in 2021
  1. Akond, Z., Ahsan, M.A., Alam, M. et al. Publisher Correction: Robustification of GWAS to explore effective SNPs addressing the challenges of hidden population stratification and polygenic effects. Sci Rep 11, 22306 (2021). https://doi.org/10.1038/s41598-021-00399-z
  2. Robustification of Quadratic Discriminant Analyzer and Its Application for Gene Expression Data Analysis. Journal of Statistical Sciences Vol. 21((2)):45-60
  3. rMisbeta: A robust missing value imputation approach in transcriptomics and metabolomics data. https://doi.org/10.1016/j.compbiomed.2021.104911
  4. Alam, M.J., Mydam, J., Hossain, M.R. et al. Robust regression based genome-wide multi-trait QTL analysis. Mol Genet Genomics 296, 1103–1119 (2021). https://doi.org/10.1007/s00438-021-01801-1
  5. Sarker, B., Rahaman, M., Khan, S., Bosu, P., Mollah, M. (2021). Bioinformatic Analysis of Differentially Expressed Genes (DEGs) Detected from RNA-Sequence Profiles of Mouse Striatum. In: Sinha, B.K., Mollah, M.N.H. (eds) Data Science and SDGs. Springer, Singapore. https://doi.org/10.1007/978-981-16-1919-9_9
  6. Khatun Shamima Mst , Alam Md Ashad, Shoombuatong Watshara , Mollah Nurul Haque Md , Kurata Hiroyuki *, Hasan Mehedi Md *, Recent Development of Bioinformatics Tools for microRNA Target Prediction, Current Medicinal Chemistry 2022; 29(5). https://dx.doi.org/10.2174/0929867328666210804090224
  7. Harun-Or-Roshid, M., Ali, M.B., Jesmin, Mollah, M.N.H. (2021). Association of IL-6 Gene rs1800796 Polymorphism with Cancer Risk: A Meta-Analysis. In: Sinha, B.K., Mollah, M.N.H. (eds) Data Science and SDGs. Springer, Singapore. https://doi.org/10.1007/978-981-16-1919-9_3
  8. Akond, Z., Ahsan, M.A., Alam, M. et al. Robustification of GWAS to explore effective SNPs addressing the challenges of hidden population stratification and polygenic effects. Sci Rep 11, 13060 (2021). https://doi.org/10.1038/s41598-021-90774-7
  9. Phylogenetic Clustering of Microbial Communities Basedon 16S rRNA Sequences.nternational Journal of Statistical Sciences ISSN 1683-5603Vol. 21(1), 2021, pp 117-126
  10. Harun-Or-Roshid M, Ali MB, Jesmin, Mollah MNH (2021) Statistical meta-analysis to investigate the association between the Interleukin-6 (IL-6) gene polymorphisms and cancer risk. PLoS ONE 16(3): e0247055.https://doi.org/10.1371/journal.pone.0247055
  11. Tasmia Amena Samme , Ahmed Faysal Fee , Mosharaf Parvez, Hasan Mehedi and Mollah Haque Nurul *, An Improved Computational Prediction Model for Lysine Succinylation Sites Mapping on Homo sapiens by Fusing Three Sequence Encoding Schemes with the Random Forest Classifier, Current Genomics 2021; 22(2). https://dx.doi.org/10.2174/1389202922666210219114211
  12. Ahmed Faysal Fee , Khatun Shamima Mst., Mosharaf Parvez Md. and Mollah Nurul Haque Md. *, Prediction of Protein-protein Interactions in Arabidopsis thaliana Using Partial Training Samples in a Machine Learning Framework, Current Bioinformatics 2021; 16(6). https://dx.doi.org/10.2174/1574893616666210204145254
  13. Islam Merajul Md. , Alam Jahangir Md. , Ahmed Faysal Fee , Hasan Mehedi Md. and Mollah Nurul Haque Md. *, Improved Prediction of Protein-Protein Interaction Mapping on Homo Sapiens by Using Amino Acid Sequence Features in a Supervised Learning Framework, Protein & Peptide Letters 2021; 28(1). https://dx.doi.org/10.2174/0929866527666200610141258
  14. Regression based fast multi-trait genome-wide QTL analysis https://doi.org/10.1142/S0219720020500444
List of publications in 2020